The manuscript collections include family files, diaries, and biographical information on Alabama Baptist pastors and laity; and county, state, and local materials. The following is a list of selected items. It is not comprehensive.
Alabama - Pardon Petitions and Amnesty Papers- Petitions, affidavits, and correspondence of those Alabamians seeking amnesty offered by President Johnson following the Civil War. Index for entire series, Special Collection houses only Alabama section. (MFS 809)
- Lists of those assessed for property, goods, etc. 1865 - 1866 (MFS536)
- Bibb County (MFS 573)
- Blount County (MFS 572)
- Choctaw County (MFS 572, 576)
- Conecuh County (MFS 572, 575)
- Coosa County (MFS 587)
- Jefferson County (MFS 605 - 6 reels)
- Monroe County (MFS 578)
- Talladega County (MFS 590)
- Wilcox County (MFS 580 - 9 reels)
- List of all people who died during the year prior to June 1 of the census year: 1850, 1860, 1870, 1880 (MFS 841). ; Published copy for 1850 and 1860 (shelved with census index)
- Correspondence, reports, etc. of those in charge of and working with the Freedman's Bureau, 1865 - 1870. (MFS 809)
- Correspondence, reports, etc. of the teachers and missionaries to the Board. 385 reels (MFS 727). ; Printed Index CD 3065.C6 H6 1975x
- Correspondence, reports, etc. of those establishing Sunday Schools; data from the schools. (MFS 795) ; Printed index BV 1503.A75 S64 1980
- Correspondence, reports, etc. from missionaries sent by the Church of England to the American Colonies. ; Materials arranged by colony. (MFS 828)
- Collection of correspondence, family charts, abstracted family and county materials collected and compiled by Maud McLure Kelly. (SC 829 & SC 2739)
- Collection of correspondence, affidavits, reports of service of the Revolutionary War veterans compiled by Lyman C. Draper. ; Available: King's Mountain and Alabama, Georgia, and South Carolina series. (MFS 603)
- Collection of materials - family data, county sources, etc. of North Carolina. 72 reels; index on 3 reels. ; Materials arranged alphabetically. (MFS 382)
- North Carolina marriage bonds (1741 - 1868) were statements of intent for couples who planned to wed. (MHB 7) ; Printed guide F 253.J3 1977x
- Materials collected by Panton, Leslie and Co. Subjects: Indians of North America, Southern States, and Trading Posts. (MFS 881) ; Printed guide E 78.S65 P36 1986x